PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G108500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 274aa MW: 27679.9 Da PI: 10.3893

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G108500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.4e-38	36	131	3	98
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + s+ +++ns+s ++ + Manes.11G108500.1.p 36 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRAGGNSNSLSSIS 125 79******************************************************************8885555555555444445555 PP TCP 93 saaksk 98 s+++s+ Manes.11G108500.1.p 126 SSTNSS 131 554443 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.3E-33	41	130	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MSNSDTGANN GGGVTNGALI DPQRQQPSGT NGALVVKKPP SKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV SVRAGGNSNS 120 LSSISSSTNS SVMDHKPLLG PTPFILGKRV RSEDDNNGGK DDGGVSVGPT VGSLVGSAGA 180 GAAPGGFWAV PARPDFWGFA AAAPPDMVVQ QAAVAAQQPS LFVQQHAAAA AAAAAMGEAS 240 AARVGNYLPG HLNLLASLSG GPGSSGRREE DPR*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G108500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021628682.1	0.0	transcription factor TCP21-like
Swissprot	Q9FMX2	6e-96	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2C9V0D4	0.0	A0A2C9V0D4_MANES; Uncharacterized protein
STRING	cassava4.1_013743m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-46	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.11G108500.1.p