PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G110900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family Nin-like
Protein Properties Length: 931aa    MW: 103305 Da    PI: 6.4374
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G110900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK91.56.2e-29622672252
               RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                          ek+isle+l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rk+k++
  Manes.11G110900.1.p 622 EKTISLEVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKLKKV 672
                          79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.712611692IPR003035RWP-RK domain
PfamPF020423.5E-25624672IPR003035RWP-RK domain
SuperFamilySSF542776.38E-24835927No hitNo description
Gene3DG3DSA:3.10.20.2404.2E-24840924No hitNo description
PROSITE profilePS5174524.919842925IPR000270PB1 domain
SMARTSM006663.2E-27842925IPR000270PB1 domain
CDDcd064073.27E-43843924No hitNo description
PfamPF005645.0E-18843924IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 931 aa     Download sequence    Send to blast
MEDGGFKTDS VSRNLPGAAM DLDFMDELLY DGCWLTTDGL NISQPGLSSS TVPNDSSQYF  60
PFVDTNLHQQ INQDGMENNF PENPPLSNPK VEQLADDESQ DHKSVKITTS SVSAGFPNEG  120
SELSRSFWIE PRADPGPTSS VKVRLMHAIR RLKECTKDRE VLVQIWVPTK KEGKHVLTTT  180
DQPCFVSLKS ESLARYRYVS ENYHFPVEGD SKESLGLPGR VFLGKLPEST PDVRFFRNDE  240
YPRKTYAKQY NISGSLAVPV FERGTGTCLG VVEVITTTRY INYRSELETI CKALEAFDLR  300
SSQDFCPPSV KACKEFCQAA VPEISEILGS VCETHKLPLA LTWARCFQQG KGGCRHFDEK  360
FANCISTVDS ACFVDDRECL VFHAACSEQF LSLGQGIVGR AFVTNKQCFA SDVTAFSKTD  420
YPLSHHAKVL GLHAAVAIPL RSTHDGSADF VLELFLPKDC RDPEEHKQMQ ELLPIAIQQA  480
CRSLQVVMDK ELEGNRSWQM AIASNEINNK QETHIFAASS LNEPYPLGSS WFAQMLEAQQ  540
KGKRVCVSWD NPEEPKEEFK VATHWDEGLE KLYEGQVFAE SGQLQQNSGR KDSTEGGNNS  600
SFAGQQSLGS RKTGEKRRTK TEKTISLEVL RQYFAGSLKD AAKSIGVCPT TLKRICRQHG  660
ISRWPSRKLK KVGHSLKKLQ LVIDSVQGAE GAIQIGSFYN TFPELTSPSF CRKPSLMMNE  720
NLKPLNPQPE SGTSNAGATA SKSPSSSCSQ SSGSSISCST GAKEHTITNN TSNTEDALAV  780
EDPGGVLKRT LSDAELHALY REEPKPLARS QSHKILGDQP SLDQILPPLG KGSGKNLREN  840
GAFRVKANFG EDKVRFSLQP SWCFKDLQQE LAKRFNISDV CKIDLKYLDD DHEWVLLTCD  900
ADLEECKDIY RLTQSQTIKL SVHQASQNLR *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G110900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628238.10.0protein NLP2-like isoform X1
RefseqXP_021628239.10.0protein NLP2-like isoform X1
SwissprotQ7X9B90.0NLP2_ARATH; Protein NLP2
TrEMBLA0A2C9V1W70.0A0A2C9V1W7_MANES; Uncharacterized protein
STRINGcassava4.1_001199m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35270.10.0Nin-like family protein