PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G121700.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 225aa MW: 25805.5 Da PI: 7.9032

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G121700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.5e-26	56	144	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF +r+ + ++s+r+g+i r++ C+keg+ + + k + r++r++tr gCka+++vk +k+gkw++tk+++eHnH+l+ Manes.11G121700.1.p 56 FYDEYARQIGFVMRVMSCRRSERDGRILARRLGCNKEGYCVSIRGKFGNVRKPRPSTREGCKAMIHVKFDKSGKWVITKFVKEHNHPLV 144 9************************************999999989*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.7E-24	56	144	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MIYVAVDLDE GIEIAESSAG QELLVQENDS IVQGGDSIVE PQEGMEFESE DAAKIFYDEY 60 ARQIGFVMRV MSCRRSERDG RILARRLGCN KEGYCVSIRG KFGNVRKPRP STREGCKAMI 120 HVKFDKSGKW VITKFVKEHN HPLVVAPREA RQSMSEKDKK IQELTMELRN KKRLCATYQD 180 HLTAFMKIVE EHSEQLSKKV QNVARNLKEF ESIELELQQH RQSP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G121700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	1e-119	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629110.1	1e-167	protein FAR1-RELATED SEQUENCE 2-like isoform X1
Refseq	XP_021629111.1	1e-167	protein FAR1-RELATED SEQUENCE 2-like isoform X1
TrEMBL	A0A2C9V1X6	1e-165	A0A2C9V1X6_MANES; Uncharacterized protein
STRING	XP_002533360.1	1e-138	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-110	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.11G121700.1.p