PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G146500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARF
Protein Properties Length: 707aa    MW: 78079 Da    PI: 7.8979
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G146500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.93.9e-23112213199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF 
  Manes.11G146500.1.p 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVVAKDVHGEMWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL 199
                          89****************************996555555..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Manes.11G146500.1.p 200 --RAENGDLCVGIRRA 213
                          ..4488999****997 PP
2Auxin_resp118.26.9e-39276359183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa  a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Manes.11G146500.1.p 276 AAALAANSQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMAFETEDSSRISWfMGTVSSVQVFDPIRWPNSPWRLLQ 359
                          678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.9E-38104216IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-28108215IPR015300DNA-binding pseudobarrel domain
CDDcd100173.32E-21111212No hitNo description
PROSITE profilePS5086312.999112214IPR003340B3 DNA binding domain
PfamPF023622.3E-21112213IPR003340B3 DNA binding domain
SMARTSM010192.2E-21112214IPR003340B3 DNA binding domain
PfamPF065072.1E-33276359IPR010525Auxin response factor
PROSITE profilePS5174511.294594690IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MKELEKSLDP QLWHVCAGSM VQIPPVNSRV FYFPQGHAEH AQSPVDFSSS SRIPALILCR  60
VASVKYLADL ETDEVYAKIS LLPLSKNELD FGEEMGLSDN SNGNNTEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TVVAKDVHGE MWKFRHIYRG TPRRHLLTTG  180
WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGIG SGPESSSTPS GWTTNSSYVN  240
PYGGFSLFLK EDENKGLRNG GLRGKGKVRP EEVMDAAALA ANSQPFEVVY YPRASTPEFC  300
VKASSVRAAM RIQWCSGMRF KMAFETEDSS RISWFMGTVS SVQVFDPIRW PNSPWRLLQV  360
TWDEPDLLQN VKCVSPWLVE LVSNMPVIHL SPFSPPRKKL RQYLDFPLDS QFQWPSFSGN  420
PLGPSSPLCY LSDNSPAGIQ GARHAQFGIS LSDVQLNNKL QSGLFLSGLQ QFNSHSRKSE  480
SFMKDHTNSS DNLSCLLTMG NSNTNSEKSD HVKRHQILLF GQRIVTEQQI SHSCSTDADS  540
QVRSGKVSSN ESPEKTKKRD VLGCTPEKQT SPEKSVSAGL SWQSLHTAET GLDAGHCKVF  600
LESEDVGRTL DLSVIGSYEE LHSRLANMFG VERSDILGHV LYQDATGSVK QNEPFSVFTK  660
TAKKLTILMN PTSRDNTARP WITRMQSAEN GLEVASNKTG PLSIFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-80838051388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1395401PRKKLRQ
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G146500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021628286.10.0auxin response factor 18
RefseqXP_021628287.10.0auxin response factor 18
RefseqXP_021628288.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A251JWI60.0A0A251JWI6_MANES; Auxin response factor
STRINGXP_002529941.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]