PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.11G149000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

TCP

Protein Properties

Length: 199aa MW: 21355.4 Da PI: 10.0013

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.11G149000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.6	1.6e-32	28	95	6	73
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 ++ +++h+kv+gRdRR+Rl+a+caar+F+L++eLG ++d++tieWLl++a+p+i ++tg + +s+ + Manes.11G149000.1.p 28 KPRKDRHSKVNGRDRRIRLPAPCAARIFQLTRELGNKTDGETIEWLLRKAEPSIVAATGHGITSKANI 95 5789********************************************************65555333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.2E-28	30	108	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.714	30	84	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MNLPSSSQRG RPKSISLNTP KLLINNAKPR KDRHSKVNGR DRRIRLPAPC AARIFQLTRE 60 LGNKTDGETI EWLLRKAEPS IVAATGHGIT SKANIAPAPP VAAAASGQSF ISPLSSGKLP 120 LGRVDFSGPG VMYPCDASGA VTKAQGILLK NCEFPRPEQA SPSFEFDLVA NFDKEFAVND 180 VFQFMTGNDL EGEVQLQV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.11G149000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021627378.1	1e-144	transcription factor TCP9-like
TrEMBL	A0A2C9V1I7	1e-143	A0A2C9V1I7_MANES; Uncharacterized protein
STRING	cassava4.1_021810m	1e-144	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	6e-30	TCP family protein

Link Out ? help Back to Top
Phytozome	Manes.11G149000.1.p