PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G158600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 218aa    MW: 23760.9 Da    PI: 8.4968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G158600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.8e-183789156
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                         + y+GVr++   ++Wv+e+r+p   + k+ r++lg+f t+e+Aa+a++ a+++++ge
  Manes.11G158600.1.p 37 PVYRGVRRRN-GNKWVCEVREP---NmKSSRIWLGTFPTPEMAARAHDVAALAFRGE 89
                         68*****887.9******9998...8888*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-133789IPR001471AP2/ERF domain
SMARTSM003802.4E-2338102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-293898IPR001471AP2/ERF domain
PROSITE profilePS5103221.973896IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-213897IPR016177DNA-binding domain
PRINTSPR003675.3E-83950IPR001471AP2/ERF domain
CDDcd000187.02E-253998No hitNo description
PRINTSPR003675.3E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVSEIASSSS PSSTQKPVSV VKKRKAGRTK FKETRHPVYR GVRRRNGNKW VCEVREPNMK  60
SSRIWLGTFP TPEMAARAHD VAALAFRGEF AALNFIDSAS ILPRAKSSSA RDIKRAVLDF  120
VEAFNRPSVP SSSSSSSSSG CFNPCISTSD DFPGEKRQEN EANAAAATLF LDEEALFNMP  180
VLLDSLAEGL ILTPPSIGKE FDWDEIASAV DMTLWTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1436951271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. {ECO:0000269|PubMed:17136305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G158600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By calcium ion, methyl-jasmonate (MeJA), cold, drought, and high salinity stress. {ECO:0000269|PubMed:17136305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629078.11e-157dehydration-responsive element-binding protein 1F-like
SwissprotA2WZI42e-53DRE1F_ORYSI; Dehydration-responsive element-binding protein 1F
SwissprotQ8S9Z52e-53DRE1F_ORYSJ; Dehydration-responsive element-binding protein 1F
TrEMBLA0A2C9V3B51e-156A0A2C9V3B5_MANES; Uncharacterized protein
STRINGcassava4.1_033892m1e-157(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.11e-49C-repeat-binding factor 4
Publications ? help Back to Top
  1. Wang Q, et al.
    Overexpression of a rice OsDREB1F gene increases salt, drought, and low temperature tolerance in both Arabidopsis and rice.
    Plant Mol. Biol., 2008. 67(6): p. 589-602
    [PMID:18470484]
  2. Liu HH,Wang YG,Wang SP,Li HJ
    Cloning and characterization of peanut allene oxide cyclase gene involved in salt-stressed responses.
    Genet. Mol. Res., 2015. 14(1): p. 2331-40
    [PMID:25867379]