PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G162100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 162aa    MW: 17775.2 Da    PI: 9.669
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G162100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.15.1e-1415105792
                NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          +lP a v r++k  l       +  i kda     e +  fi ++++ a+d c++ kr+tin++d+l al ++ f ++v p+k+ l  ++
  Manes.11G162100.1.p  15 ELPKAIVRRVVKDKLSHcstdgDLNIHKDALLAFSESARIFIHYLSATANDICKESKRQTINANDVLKALEEIEFTEFVGPIKASLDDFK 104
                          799999*****9998752221145799*********************************************************999987 PP

                NF-YB  92 e 92 
                           
  Manes.11G162100.1.p 105 R 105
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.104.7E-3112145IPR009072Histone-fold
PfamPF008081.7E-111584IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.04E-2416128IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MESEKVEKVV PEVEELPKAI VRRVVKDKLS HCSTDGDLNI HKDALLAFSE SARIFIHYLS  60
ATANDICKES KRQTINANDV LKALEEIEFT EFVGPIKASL DDFKRKNVGK KAGASETGKK  120
AGASETGKKT GASETNEVKK KRKVEEPSKK SEGKSKQKKD D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138143KKKRKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.11G162100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629009.11e-111DNA polymerase epsilon subunit 3
TrEMBLA0A2C9V1W91e-110A0A2C9V1W9_MANES; Uncharacterized protein
STRINGcassava4.1_017996m1e-111(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-43nuclear factor Y, subunit B11