PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G002600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 159aa    MW: 18501.8 Da    PI: 9.0237
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G002600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.11.5e-15248550
                         SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEEEEE CS
               SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.klyeys 50
                         ++s+ +v f+kR+ ++ KKAeELS LC++ v++i f ++g k+ +++
  Manes.12G002600.1.p  2 STSRSKVMFCKRKRTLKKKAEELSKLCGVPVCLICFEPDGtKIDTWP 48
                         67999**********************************94577776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.8E-4149IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.241141IPR002100Transcription factor, MADS-box
CDDcd001201.10E-13249No hitNo description
PfamPF003193.6E-14441IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-14680IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MSTSRSKVMF CKRKRTLKKK AEELSKLCGV PVCLICFEPD GTKIDTWPED KKEVGDILVK  60
YIYILNKDNI DLQLGFMDAN NKNQDLVAKE ESCKHEEKKK KKKKKVFETW NTRLDYLPEE  120
SLHDILKFLE QKAEILEERI MQMAMIRVLA AKSNQCIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198104KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G002600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629197.11e-112agamous-like MADS-box protein AGL103
TrEMBLA0A2C9UTM61e-111A0A2C9UTM6_MANES; Uncharacterized protein
STRINGcassava4.1_027066m5e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1711348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65330.12e-10AGAMOUS-like 78