PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G008700.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 191aa    MW: 21920.6 Da    PI: 9.7892
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G008700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.33.1e-33111169159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+++v++tYeg H h+
  Manes.12G008700.1.p 111 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHKGCNVKKQVQRLTRDEEIVVTTYEGMHSHP 169
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-3396169IPR003657WRKY domain
SuperFamilySSF1182901.96E-29103170IPR003657WRKY domain
PROSITE profilePS5081130.297106171IPR003657WRKY domain
SMARTSM007741.6E-38111170IPR003657WRKY domain
PfamPF031065.2E-27112169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MENFTPFLPL SSSVATPMSL NMGSSQGFTD YFQATNENAF LGLIQEMEDH RPVVGGLNGE  60
NSNRSSQNKS VSGSENEDEL LGKKKKKGSS SEKKMRKHRY AFQTRSRVDI LDDGYRWRKY  120
GQKAVKNNKF PRSYYRCTHK GCNVKKQVQR LTRDEEIVVT TYEGMHSHPI EKSMDNFEHI  180
LTQMQIYNSF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-28101168774Probable WRKY transcription factor 4
2lex_A3e-28101168774Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18293KKKKKGSSSEKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G008700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276110.0KT827611.1 Manihot esculenta WRKY transcription factor 36 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630067.11e-143probable WRKY transcription factor 75
TrEMBLA0A140H8P01e-141A0A140H8P0_MANES; WRKY transcription factor 36
STRINGcassava4.1_028994m1e-142(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.11e-60WRKY DNA-binding protein 75
Publications ? help Back to Top
  1. Wei Y, et al.
    Genome-Wide Identification and Expression Analysis of the WRKY Gene Family in Cassava.
    Front Plant Sci, 2016. 7: p. 25
    [PMID:26904033]