PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G012100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YC
Protein Properties Length: 140aa    MW: 15694.2 Da    PI: 10.7218
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G012100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC51.22.7e-163901197
                NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                         e+++++k+ ++P  r+k+i+k d+d+++++++a  ++s++ elf+  l+ +s   a e+kr+ +k   i  av+r + + dfl+d  p
  Manes.12G012100.1.p  3 ENTEEVKRPQFPTGRVKRIVKLDKDINKVTSDALLMVSRSTELFLQFLAEKSAEVAMEKKRKIVKLDHIRIAVKRHQpTRDFLLDSLP 90
                         8899*********************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.54E-17591IPR009072Histone-fold
Gene3DG3DSA:1.10.20.108.6E-18576IPR009072Histone-fold
PfamPF008085.9E-181275IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MAENTEEVKR PQFPTGRVKR IVKLDKDINK VTSDALLMVS RSTELFLQFL AEKSAEVAME  60
KKRKIVKLDH IRIAVKRHQP TRDFLLDSLP VPTHLSGKPP VEKTRPTPAA DKSLPPGTRR  120
IDSFFAKSAN EAPVQINEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G012100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631336.12e-96dr1-associated corepressor
TrEMBLA0A2C9USQ54e-95A0A2C9USQ5_MANES; Uncharacterized protein
STRINGcassava4.1_026058m6e-96(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.11e-47nuclear factor Y, subunit C13