PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G017800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ARR-B
Protein Properties Length: 290aa    MW: 33286.9 Da    PI: 8.998
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G017800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.64.2e-111672061353
              G2-like  13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkY 53 
                           Fv av q+ G ++  Pk+il+lm+v+ Lt+e+v+ HL kY
  Manes.12G017800.1.p 167 DFVTAVIQI-GFDEVGPKKILDLMSVPWLTRENVARHLEKY 206
                          6********.9*****************************9 PP
2Response_reg24.61.3e-0919681159
                         HHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHH CS
         Response_reg 11 rellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGl 59
                         +++l+++l+k  + ev+ ++ ++eal+ll+e++  +D+++ D++mp++d +
  Manes.12G017800.1.p 19 LKILEKMLKKCSF-EVTRCALAREALHLLHERKdgYDIVISDVNMPDVDVM 68
                         7899*********.***************999999************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004480.004415102IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.6E-101967No hitNo description
CDDcd001563.65E-1319106No hitNo description
PfamPF000725.4E-51966IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.97E-1819118IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-968110No hitNo description
Gene3DG3DSA:1.10.10.603.6E-12166212IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-9167206IPR006447Myb domain, plants
SuperFamilySSF466894.66E-6167212IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDNVFSSPRN AAFPADLRLK ILEKMLKKCS FEVTRCALAR EALHLLHERK DGYDIVISDV  60
NMPDVDVMSV DGEKRWLMRG VQHGACDYLL KPIRMKELRN IWQHAFRKKI LEEMETMQMT  120
INGLDQLNNG LFCGEDLTSI KKRKEKILKA NMITDILVTI LPQRKPDFVT AVIQIGFDEV  180
GPKKILDLMS VPWLTRENVA RHLEKYLHYL SRLEREEELK TCVGGIKHSD SPVTGYVTIS  240
TQNLINMQHL DVKKRNCGFP GTGLQVQNME PRNHGSEAKL RFMQNAKEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250, ECO:0000269|PubMed:12610214}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G017800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630700.11e-173two-component response regulator ARR11-like
SwissprotQ9FXD69e-69ARR11_ARATH; Two-component response regulator ARR11
TrEMBLA0A2C9USR60.0A0A2C9USR6_MANES; Uncharacterized protein
STRINGcassava4.1_026910m1e-160(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.14e-62response regulator 11
Publications ? help Back to Top
  1. Zwack PJ, et al.
    Cytokinin Response Factor 6 Represses Cytokinin-Associated Genes during Oxidative Stress.
    Plant Physiol., 2016. 172(2): p. 1249-1258
    [PMID:27550996]
  2. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]