PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G026500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

YABBY

Protein Properties

Length: 216aa MW: 24192.3 Da PI: 6.3929

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G026500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	216.2	1.1e-66	6	169	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks.nv 86 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCt+llsvn++k s q la+ sh +++ ee+ ee + + Manes.12G026500.1.p 6 QLFDLPEQICYVQCGFCDTILLVSVPCSSLSMVVTVRCGHCTTLLSVNMMKVSfvpfQFLASLSH------DHQEEETSPEEVYAQRaLE 89 7899*******************************************9998555555666665......3344444443333333033 PP YABBY 87 ekeesastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++++s++ s ++l++ ++ p +++PPekrqr+Psaynrfikeei+r+ka+nP+++h+eafs+aaknWa fP++h + Manes.12G026500.1.p 90 IQRSSSMVAFSDNELED---DKNPVNRAINKPPEKRQRAPSAYNRFIKEEIRRLKAENPSMAHKEAFSTAAKNWANFPPVHSK 169 33333344444434332...3333344799*************************************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.3E-64	11	168	IPR006780	YABBY protein
SuperFamily	SSF47095	6.81E-9	113	165	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.9E-6	117	165	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MATLNQLFDL PEQICYVQCG FCDTILLVSV PCSSLSMVVT VRCGHCTTLL SVNMMKVSFV 60 PFQFLASLSH DHQEEETSPE EVYAQRALEI QRSSSMVAFS DNELEDDKNP VNRAINKPPE 120 KRQRAPSAYN RFIKEEIRRL KAENPSMAHK EAFSTAAKNW ANFPPVHSKE GGESGGQEEE 180 KATWSCEAIK VNTGGKGFHE RKVPRHSIWA NTPFE*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G026500.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629374.1	1e-162	axial regulator YABBY 4-like
Swissprot	Q9LDT3	7e-78	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2C9UT63	1e-161	A0A2C9UT63_MANES; Uncharacterized protein
STRING	cassava4.1_033451m	1e-149	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	4e-78	YABBY family protein

Link Out ? help Back to Top
Phytozome	Manes.12G026500.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]