PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G028900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 167aa    MW: 18906.9 Da    PI: 10.4696
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G028900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.24.4e-061059255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r   n  E+ RR ++++ +++L  l+ ++   p   ls  e+L +A+ ++k+Lq
  Manes.12G028900.1.p 10 RLQRNVKEKVRRLHMKNLLAKLAPLVHPN---P-STLSGPEVLVQATSHVKQLQ 59
                         66789*********************996...3.56*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.07E-9675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.315858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-81075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MARKNTTSSR LQRNVKEKVR RLHMKNLLAK LAPLVHPNPS TLSGPEVLVQ ATSHVKQLQG  60
RIEELRNRRM EMQSTMNNSS SSARIPVMEI RSRDDVFEVN LITGLRKNFM LHEVINVIQE  120
EGAEVTSFAQ FNDGDCVFHI IRAKAISARI GIEISTIEEK LKEVVY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G028900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631192.11e-119transcription factor bHLH167
TrEMBLA0A2C9UT301e-117A0A2C9UT30_MANES; Uncharacterized protein
STRINGcassava4.1_020038m2e-64(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68492141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.18e-30bHLH family protein