PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G059800.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 257aa MW: 29794.5 Da PI: 6.5971

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G059800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.4	5.7e-24	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +Y++++GF vr++++++s+ n+ ++ ++fvCskeg+re++ +++ + + tr gC a+l++ +++ kw+vtk+ +eHnH+l Manes.12G059800.2.p 76 EFYIAYGRHIGFIVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYICrKDRVLPPPPITREGCPAMLRLALRDGVKWVVTKFIKEHNHPL 165 6***************************************998762333444899******************************9 PP FAR1 90 a 90 + Manes.12G059800.2.p 166 M 166 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-21	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MEGSSNQAFD SDDNGRCFHD YDRHEFADNE LSKNVGLCSD EVDSVIEQSN ENLLSTSDIV 60 EPYFGMEFNS RDDAREFYIA YGRHIGFIVR IHHNRRSRVN NMVIGQDFVC SKEGFREKKY 120 ICRKDRVLPP PPITREGCPA MLRLALRDGV KWVVTKFIKE HNHPLMSPDK VPWRGSAKNL 180 FSEDEKDRKI RELTSELNNE KQRCKRRCAA YQEQLQMVLS YIEEHTNHLS SKVQDVVNNV 240 KKLENELLDD SGCKYA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G059800.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629533.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_021629534.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_021629535.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_021629536.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_021629538.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
Refseq	XP_021629539.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X1
TrEMBL	A0A251JMN6	0.0	A0A251JMN6_MANES; Uncharacterized protein
STRING	cassava4.1_025297m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	7e-44	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.12G059800.2.p