PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G076500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GeBP
Protein Properties Length: 398aa    MW: 44415.2 Da    PI: 5.0429
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G076500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573122.42.1e-38139234297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          ++qrlwse+Dei++L Gl ++k+++g++p++d+ +f+ef+kks++++vsk+ql++KirrLKkK++++ +ka++g++p+fsk+hd k+fel
  Manes.12G076500.1.p 139 AIQRLWSEDDEIAILNGLSQYKSEKGSNPYADMGDFHEFIKKSLHVDVSKNQLMDKIRRLKKKYRDNIEKAENGRDPVFSKPHDLKSFEL 228
                          58**************************************************************************************** PP

               DUF573  92 skkiWg 97 
                          skk+W+
  Manes.12G076500.1.p 229 SKKFWD 234
                          *****7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-34141234IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MAIKRLSENP PPAASSSEEE EEEENDSVEK NDSEDEQKDV GDGDDDEEEQ QESPVLNKST  60
VHGSPLKYNS ASESDSESTQ PSPSPSAFTI KLHKPSSKPN KSVSKRPAES DCIAGETPRK  120
KKNKAIGGGD DEEVKKGSAI QRLWSEDDEI AILNGLSQYK SEKGSNPYAD MGDFHEFIKK  180
SLHVDVSKNQ LMDKIRRLKK KYRDNIEKAE NGRDPVFSKP HDLKSFELSK KFWDGDKNYE  240
KNGTVNRSGK VNSSNDGGGS GGGDGGVRIT LALACQKKGN ELKARKQMQT SNKQVKIEEN  300
HQVKAEEMMQ EKGEDVEEEL WEKYPYLSES LEMGGLSEGA KVILRQQLGI IEKGKLKELD  360
EKRKRLKQAE LELFVQRMEL AHEQVKLTLD SIKSEES*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G076500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631098.10.0STOREKEEPER protein-like
TrEMBLA0A251JMP00.0A0A251JMP0_MANES; Uncharacterized protein
STRINGcassava4.1_034346m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139661119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.14e-30DNA-binding storekeeper protein-related transcriptional regulator