PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G085600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family MYB
Protein Properties Length: 261aa    MW: 29968.4 Da    PI: 6.3177
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G085600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.51.5e-131461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W++eEd +l  ++ ++G  +W+  ++  g+ R++k+c++rw +yl
  Manes.12G085600.1.p 14 KGAWSPEEDYKLRTYIVRYGHWNWRELPKFAGLQRCGKSCRLRWMNYL 61
                         79******************99************************97 PP
2Myb_DNA-binding57.92.3e-1868112248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          g+ ++eE++l++++++qlG++ W++Ia++++ gRt++++k++w+++l
  Manes.12G085600.1.p  68 GKYSKEEEDLIIKLHNQLGNK-WSRIAAELP-GRTDNEIKNHWHTHL 112
                          789******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.4961IPR017930Myb domain
SuperFamilySSF466893.67E-2911108IPR009057Homeodomain-like
SMARTSM007171.6E-91363IPR001005SANT/Myb domain
PfamPF002492.3E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.2E-211568IPR009057Homeodomain-like
CDDcd001677.92E-81661No hitNo description
PROSITE profilePS5129426.2762116IPR017930Myb domain
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002498.0E-1768112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.4E-2669115IPR009057Homeodomain-like
CDDcd001672.62E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MVRSPFFDKN GLKKGAWSPE EDYKLRTYIV RYGHWNWREL PKFAGLQRCG KSCRLRWMNY  60
LRPGVKHGKY SKEEEDLIIK LHNQLGNKWS RIAAELPGRT DNEIKNHWHT HLKKRSKESQ  120
RESGLKEKYS IEQSSETSQL NGDLKVESFV PNTPSHAILE SFPLSPAPSS SEISHWTSDS  180
NLATLSSTST SSDWIAAEDS LPSFETFENT SEDFWTQPFV ADQDGYKFPM LDEGLISSFL  240
TSYEDSIDLF YKVMQELPGN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23121155107B-MYB
1h8a_C2e-231211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G085600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630080.10.0transcription factor MYB15-like
TrEMBLA0A2C9UUH60.0A0A2C9UUH6_MANES; Uncharacterized protein
STRINGcassava4.1_014242m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-57myb domain protein 15