PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G087500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 472aa    MW: 52295.8 Da    PI: 6.4454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G087500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19226276256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Manes.12G087500.1.p 226 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 276
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.20E-33225285No hitNo description
SuperFamilySSF541717.19E-23226284IPR016177DNA-binding domain
SMARTSM003801.9E-39226289IPR001471AP2/ERF domain
PROSITE profilePS5103222.932226283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-32226284IPR001471AP2/ERF domain
PfamPF008472.6E-12227276IPR001471AP2/ERF domain
PRINTSPR003671.0E-10227238IPR001471AP2/ERF domain
PRINTSPR003671.0E-10249265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAAAKDNSSK SKKVVDETQR MTRQDWELDR GEKEADINFL ERQQWKTIFG EASTAERPLR  60
KIHGPQRQDA IQFSASSAHH SIPSFSVSPS SASALSLHPP SSSTSSSSSR LLFPFAFEGF  120
NQPIQLPHQF RTNPSMPYFR PPHQSAQNQQ QMISFAQNQQ QGIACPPFFG GESAIAHQQQ  180
QQQMLQYWND SWSSSPRGRM MMMNRLGPDG RPLFRPPVQP INTTKLYRGV RQRHWGKWVA  240
EIRLPRNRTR LWLGTFDTAE DAALAYDREA FKLRGENARL NFPDLFLNKD KAMSTATTST  300
VLSSPTAHQS SSTKQTQEIL DWQASNVESM PPPPLPPPPP PPSKQPPGDN PDNDSGMESS  360
GATVNDEVQA VAEGSPVGEG VSGSQELGWG DMAEAWFNAI PAGWGPGSPV WDDLDTSNNL  420
LLQAHLPFGN PSHQQFSDSS DIQRQQDNMG SASSSSSSSF PLKSFYWKDQ D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-20225283160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G087500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631268.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A2C9UVX30.0A0A2C9UVX3_MANES; Uncharacterized protein
STRINGcassava4.1_006897m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.12e-58ERF family protein