PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.12G088400.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

bHLH

Protein Properties

Length: 213aa MW: 24058.2 Da PI: 6.9802

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.12G088400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.6e-12	21	71	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 + + +E++RR+++++ f++L +llPk+ +sk l + + +A++YIksL+ Manes.12G088400.1.p 21 TERKVIEKNRRNQMKTLFSNLNSLLPKQ---SSKEaLPLPDQVDEAINYIKSLE 71 56789********************8...56666**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-12	18	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.769	18	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-11	20	90	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.9E-8	22	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-4	24	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MEMNRSKSKT ATFHSTSATK TERKVIEKNR RNQMKTLFSN LNSLLPKQSS KEALPLPDQV 60 DEAINYIKSL EEKLKKSKEK KESLSGRKRS FSNFVSSFES ASNLVAPKLE IREMGSSLQI 120 ILISGLDNQF IFYDIIHILE DEGVEIPNAS FSVSGNSIFH VVHAQMKESD FSYGAAKVTE 180 RLNRYINGSA SELELGPELW DFNDLNPETW VF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.12G088400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021629454.1	1e-154	transcription factor bHLH162-like
TrEMBL	A0A2C9UWU0	1e-152	A0A2C9UWU0_MANES; Uncharacterized protein
STRING	cassava4.1_022872m	1e-153	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	3e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	Manes.12G088400.1.p