PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G107400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family WRKY
Protein Properties Length: 399aa    MW: 43762.6 Da    PI: 9.5643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G107400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31327384359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  Manes.12G107400.1.p 327 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNHN 384
                          99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-16277323IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.8E-33313386IPR003657WRKY domain
PROSITE profilePS5081132.179320386IPR003657WRKY domain
SuperFamilySSF1182901.57E-27323386IPR003657WRKY domain
SMARTSM007741.1E-38325385IPR003657WRKY domain
PfamPF031063.5E-27327383IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MGFCNRCHRF DQTAREKTTF LFTLYQLPTS HSFLFTHFNF SLGFSFFHDL VSLIMAVELM  60
MAFSNDGFVT KLEDNAVQEA ASGLESVNKL IRLLSQQNQE TIQSSSSPSA TLRSSMDIDM  120
DCKAVADVAV SKFKKVISLL GRTRTGHARF RKAPVAVAMA AALSHTQISQ ENQLLESKVY  180
YATPIQQIPP TPPVPNHYHD YSSMGMMPNN NGVIGERKES STTINFSYSS AGNSFVSSLT  240
GDTTDGKQPS SSSAFQITNP SQVSSAGKPP LSSSSLKRKC SSENLGSANC SGPSGRCHCS  300
KKSRKLRLKR VVRVPAISLK MSDIPPDDYS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERALDDP SMLVVTYEGE HNHNLPIAEP TNLILESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-223233861577Probable WRKY transcription factor 4
2ayd_A6e-22313386274WRKY transcription factor 1
2lex_A6e-223233861577Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G107400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276330.0KT827633.1 Manihot esculenta WRKY transcription factor 58 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629421.10.0probable WRKY transcription factor 15 isoform X1
SwissprotQ9STX03e-90WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2C9UWI40.0A0A2C9UWI4_MANES; Uncharacterized protein
STRINGcassava4.1_011062m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.26e-60WRKY DNA-binding protein 11