PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G119300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family M-type_MADS
Protein Properties Length: 198aa    MW: 21694.8 Da    PI: 9.5233
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G119300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF435.8e-141047845
                         HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
               SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                         nr+ +fsk r g +KKA+EL+ LC+ e a++++s++gk
  Manes.12G119300.1.p 10 NRKASFSKCRPGTFKKANELCSLCAFETALVVLSPDGK 47
                         9************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-6154IPR002100Transcription factor, MADS-box
CDDcd001202.15E-12254No hitNo description
SuperFamilySSF554558.63E-13873IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.891055IPR002100Transcription factor, MADS-box
PfamPF003194.2E-131051IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGRKKSQGGN RKASFSKCRP GTFKKANELC SLCAFETALV VLSPDGKSFP FDHPCYEAIR  60
KKLANPGDPN REFAQHLAEH EATICELQKQ YAVSLQELDA AQKRGEKLKR MREALGKTAI  120
NPLWERPIDE LSLEELTTLK TLMEQVKGKL VQRLGKLTIQ APNAFASSSR SSAEAIDPNI  180
TIPNGVGAFS HGISHGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G119300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630375.11e-146agamous-like MADS-box protein AGL61
TrEMBLA0A2C9UVG91e-144A0A2C9UVG9_MANES; Uncharacterized protein
STRINGcassava4.1_030994m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1639169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.16e-23AGAMOUS-like 61