PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G127100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 215aa    MW: 24451.5 Da    PI: 10.1535
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G127100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-1253100355
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++h+e+Er+RR riN+ +++Lr++lP++      K +Ka++L ++++ +k+L+
  Manes.12G127100.1.p  53 QKHKEAERKRRIRINDQYANLRTVLPNL-----IKRNKASVLAETIQRVKELE 100
                          68*************************9.....69************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.9415099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.21E-853104No hitNo description
PfamPF000107.7E-1053100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-1254108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1354112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-856105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.33E-5137205No hitNo description
Gene3DG3DSA:3.30.70.2603.5E-5141203No hitNo description
CDDcd048731.44E-7141205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MHDMQPMSRL YDSGTCSKKY NFHSAANFMD VLSYKKLLAT SKSKEDTKVI SAQKHKEAER  60
KRRIRINDQY ANLRTVLPNL IKRNKASVLA ETIQRVKELE NTVSELKKIY GIGSLDCVFS  120
DGADMLRVEQ SKWQGEKLVK VMFSCEDKKK LMSEIARAVR SVKGKLVRAE IATMCGWAEC  180
VLWVQGLNGN QQMEILRTAL DAVIEPRMLN NKPH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15364KHKEAERKRRIR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G127100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631314.11e-159transcription factor bHLH131
TrEMBLA0A2C9UVP01e-158A0A2C9UVP0_MANES; Uncharacterized protein
STRINGcassava4.1_030122m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126113032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.12e-39bHLH family protein