PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G129500.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 318aa    MW: 35840.2 Da    PI: 5.8427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G129500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13113164155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h  +Er+RR+++N+ ++ Lr+++P++   + ++ + a+i+  A++++k+L+
  Manes.12G129500.1.p 113 QRMTHITVERNRRKQMNDYLAVLRSMMPPS---YVQRGDQASIVGGAINFVKELE 164
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.82E-13111168No hitNo description
SuperFamilySSF474598.37E-16112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.805112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-12112168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-10113164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVGRMVMETV GLQQDLFGYG YRDICTSLGG AGEEEEVSFN ETMSGFNSNH WDSSPFSMGP  60
NSVIDWDTNS SSQENCARDD GFLAGGFSPA GTVGRRKRQR NRSVKNQKEV EHQRMTHITV  120
ERNRRKQMND YLAVLRSMMP PSYVQRGDQA SIVGGAINFV KELEQLLQSL EAHKRLKKDP  180
SDTDDFSRVF SDFFTFPQYS THSTTTAEDH EQSSMAAKRQ SISAEVEVTM IESHANLKIL  240
TRRHPKQLLK MVVGLYSLCL SILHLNITSV DQMVLYSFSV KVEEECQLAS VNDIAAAVYE  300
LVVRMQEEAI SNYSYDR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101RKRQRNR
296101KRQRNR
3113124RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G129500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021630052.10.0transcription factor bHLH94-like
SwissprotQ9C7T46e-72BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A2C9UW130.0A0A2C9UW13_MANES; Uncharacterized protein
STRINGcassava4.1_025549m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-74bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]