PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G153800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 212aa    MW: 23159.3 Da    PI: 5.6502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G153800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.64.7e-08108148954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+ri +++  L++l+P       +K++ a++L +A+ Y+k L
  Manes.12G153800.1.p 108 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAILYVKFL 148
                          699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.48199148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-13104157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-12105158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12105154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.95E-10105153No hitNo description
PfamPF000102.1E-5109148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MSMETQIFQD QIPFTSFFPA GFSLQTHQIL SSSSSSTSIP ISALLGDHIS IGNDHMEEEE  60
EPEEELGAMK EMMYKIAAMQ PVDIDPATIR KPKRRNVRIS DDPQSVAARH RRERISEKIR  120
ILQRLVPGGT KMDTASMLDE AILYVKFLKR QIRLLQSNQN PPSIGGWRPL ASTTSSPLES  180
PAAAAAGPGN ALLSNGGEPG AMCFNHEVLS D*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.12G153800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021629727.11e-155transcription factor HEC3-like
TrEMBLA0A2C9UY021e-153A0A2C9UY02_MANES; Uncharacterized protein
STRINGcassava4.1_031791m1e-155(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09750.12e-47bHLH family protein