PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G013500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

MYB

Protein Properties

Length: 244aa MW: 28117.7 Da PI: 5.9795

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G013500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44	5.2e-14	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l + + G +W+++++ g+ R++k+c++rw +yl Manes.13G013500.1.p 14 RGPWTIEEDQKLMNFILSNGIQCWRLVPKLAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	49.6	9.1e-16	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+ E++++++++ +lG++ W++Ia++++ gRt++++k+ w++ Manes.13G013500.1.p 67 RGALTEAEEDQIIELHSRLGNR-WSKIAAHFP-GRTDNEIKNQWNT 110 7889****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-20	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	15.089	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.49E-28	11	108	IPR009057	Homeodomain-like
SMART	SM00717	3.1E-8	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-12	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	3.09E-6	16	61	No hit	No description
PROSITE profile	PS51294	24.772	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-24	65	117	IPR009057	Homeodomain-like
SMART	SM00717	5.5E-15	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-14	67	110	IPR001005	SANT/Myb domain
CDD	cd00167	1.66E-10	71	110	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MGRKPCCDKV GLNRGPWTIE EDQKLMNFIL SNGIQCWRLV PKLAGLLRCG KSCRLRWMNY 60 LRPDLKRGAL TEAEEDQIIE LHSRLGNRWS KIAAHFPGRT DNEIKNQWNT KIKKKLKLLG 120 IDPKTHKPVE KEKDFASEEA RQQPAETSRE ELKFQDNNPG FMGNNQIENN QVDQCCSPGQ 180 ESNLVQKSET MITDIDAAQS ESFSSTSMQE GSHQHWIDNL EDYLLSWDWF SNLEEIFPLD 240 THQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-29	12	116	5	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G013500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633069.1	0.0	myb-related protein 315-like
Swissprot	P81394	1e-76	MYB15_ANTMA; Myb-related protein 315
TrEMBL	A0A2C9UN46	0.0	A0A2C9UN46_MANES; Uncharacterized protein
STRING	cassava4.1_021041m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6625	31	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G14340.1	1e-75	myb domain protein 40

Link Out ? help Back to Top
Phytozome	Manes.13G013500.1.p

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]