PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G013600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 494aa    MW: 55537.6 Da    PI: 6.2383
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G013600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3711.6e-1131204911374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevs 88 
                          lv++L++cAeav+ +d++ a+alLa+l+ +a   g+++qR+a++f+++L+ rla  +  +++  l+p+++s ++  +e+  al+l ++++
  Manes.13G013600.1.p 120 LVQQLIACAEAVACRDKKHASALLAELRANALVFGTSFQRVASCFVQGLSDRLALlQPLGTVGVLAPQANSVNTfKAEKDEALRLVYDIC 209
                          689***************************************************955667788888888888778899999********* PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelg 173
                          P ++f+h++aN  Ilea+ege+ vHi+D++++    +GlQW++L+++La+ p+++p +lRiTgvg+    s+e l+++g+ L  +A++lg
  Manes.13G013600.1.p 210 PQIQFGHFVANASILEAFEGESSVHIVDLGMTfglpHGLQWLNLIHSLAKHPGQQPhRLRITGVGN----SAELLQAIGDELDCYARSLG 295
                          ****************************88763333789*************655549********....9******************* PP

                 GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                          ++fef   v+++le+l++e++++  gE++++n++lqlh +++es    +   ++L+++ +lsPk++++veq+++hn++ Fl rf+eal+y
  Manes.13G013600.1.p 296 LNFEFLW-VESTLENLKPEHFKLLAGEVVIINSILQLHCVVKESRGALN---SFLQILHELSPKLLILVEQDSNHNGPFFLGRFMEALHY 381
                          *******.7********************************88877777...8************************************* PP

                 GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                          ysa+fdsl+a lp+ +  r+k+E++++++ei+n+++ceg +r+erhe+l +Wr+r+++aGF+p p+++   +qak  l+k +  +gy v 
  Manes.13G013600.1.p 382 YSAIFDSLDAMLPKYDTRRAKIEQFFFAEEIKNIISCEGPARVERHERLDQWRRRMSRAGFQPSPIKT--IMQAKQWLEKANfCEGYAVT 469
                          *****************************************************************975..78**********9******* PP

                 GRAS 353 eesgslvlgWkdrpLvsvSaWr 374
                          ee+ +lvlgWk++p++++S+W+
  Manes.13G013600.1.p 470 EEKSCLVLGWKSKPIIAASCWK 491
                          *********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.80594472IPR005202Transcription factor GRAS
PfamPF035145.5E-111120491IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MSPVPYMQSE FCSDNKSYET TFLDLSPFCS VPNFSAVEND SPAWFDLDET RSHKRIKQEP  60
CSRTRANSLN SVPKLHFRDY IWAYTERYLA IEAMEEAAAA MTVGERNEVK DEEGSDGMKL  120
VQQLIACAEA VACRDKKHAS ALLAELRANA LVFGTSFQRV ASCFVQGLSD RLALLQPLGT  180
VGVLAPQANS VNTFKAEKDE ALRLVYDICP QIQFGHFVAN ASILEAFEGE SSVHIVDLGM  240
TFGLPHGLQW LNLIHSLAKH PGQQPHRLRI TGVGNSAELL QAIGDELDCY ARSLGLNFEF  300
LWVESTLENL KPEHFKLLAG EVVIINSILQ LHCVVKESRG ALNSFLQILH ELSPKLLILV  360
EQDSNHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTRR AKIEQFFFAE EIKNIISCEG  420
PARVERHERL DQWRRRMSRA GFQPSPIKTI MQAKQWLEKA NFCEGYAVTE EKSCLVLGWK  480
SKPIIAASCW KCP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A5e-671044901377Protein SCARECROW
5b3h_D5e-671044901377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G013600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633646.10.0scarecrow-like protein 21
TrEMBLA0A2C9UN380.0A0A2C9UN38_MANES; Uncharacterized protein
STRINGcassava4.1_032725m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87302945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-80RGA-like 1