PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G028200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

YABBY

Protein Properties

Length: 218aa MW: 24476.6 Da PI: 6.5039

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G028200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	204.2	4.8e-63	6	171	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnve 87 ++f+ +eq+CyvqC+fCntil+vsvP +sl++vvtvrCGhCtsllsvn++k s q la+ sh ++++++ + ee ++ + Manes.13G028200.1.p 6 HLFDLPEQICYVQCGFCNTILLVSVPCSSLSMVVTVRCGHCTSLLSVNMMKVSfvpfQFLASLSH------DHQQKDVGPEEADTPKALD 89 68999******************************************9998556566666666......6667777777766655544 PP YABBY 88 kees.astsvsseklsenedeevprvppvirP.PekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++s ++ s ++l+e +++ v r +++P Pekrqr+Psaynrfi +eei+r+ka+nP+++h+eafs+aaknWa fP++h++ Manes.13G028200.1.p 90 LQRSsSMMAYSDNELEE-DKNLVNR--VINKPaPEKRQRAPSAYNRFInREEIRRLKAENPSMAHKEAFSTAAKNWASFPPVHYK 171 44440444444444433.3333444..4567779**********669******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.1E-61	11	171	IPR006780	YABBY protein
SuperFamily	SSF47095	3.27E-5	117	167	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MATLSHLFDL PEQICYVQCG FCNTILLVSV PCSSLSMVVT VRCGHCTSLL SVNMMKVSFV 60 PFQFLASLSH DHQQKDVGPE EADTPKALDL QRSSSMMAYS DNELEEDKNL VNRVINKPAP 120 EKRQRAPSAY NRFINREEIR RLKAENPSMA HKEAFSTAAK NWASFPPVHY KEGGDGGDQE 180 EDKATWSCDA TEDNTEGNGF HERKVPRHSI WPRTPFK*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G028200.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021633752.1	1e-165	axial regulator YABBY 4 isoform X5
Swissprot	Q9LDT3	9e-76	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A2C9UPN7	1e-164	A0A2C9UPN7_MANES; Uncharacterized protein
STRING	cassava4.1_022861m	1e-157	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	6e-76	YABBY family protein

Link Out ? help Back to Top
Phytozome	Manes.13G028200.1.p

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]