PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G048400.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 276aa    MW: 30997.1 Da    PI: 5.0316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G048400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-1669120155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Manes.13G048400.2.p  69 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 120
                          89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103211.575134IPR001471AP2/ERF domain
SMARTSM003800.011240IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-8336IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-8435IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1869130IPR016177DNA-binding domain
CDDcd000185.76E-2569130No hitNo description
PfamPF008473.7E-1269120IPR001471AP2/ERF domain
PROSITE profilePS5103218.33470128IPR001471AP2/ERF domain
SMARTSM003801.2E-2470134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-1870129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010187Biological Processnegative regulation of seed germination
GO:0040008Biological Processregulation of growth
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGLLGAYDDE ETAAHAYDLA ALKYWGQDTI LNFPLSTYQE ELKDMEGQSK EEYIGSLRRK  60
SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT YATQEEAATA YDMAAIEYRG  120
LNAVTNFDLS RYIKWLRPNA RNETHQNHNH IDNGNLIPNP SQDFGLSFTS YQQSLSTKEN  180
TTSLPRPSGG SVGSASSALG LLLQSSKFKE MLERTSSNDY PLMPLESDPP RKSFPDDIQT  240
YFDCQDSSNY TEGDDIIFGE LNTFSSPIFH CELDC*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G048400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7741611e-133AB774161.1 Ricinus communis RcWRI3 mRNA for AP2-type transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632327.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN42e-83AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2C9UQW20.0A0A2C9UQW2_MANES; Uncharacterized protein
STRINGcassava4.1_025233m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.28e-77ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]