PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G055500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

FAR1

Protein Properties

Length: 257aa MW: 30044.9 Da PI: 7.237

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G055500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.1	7.9e-25	76	166	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY +Y++++GF+vr++++++s+ n+ ++ ++fvCskeg+re++ ++++ + + tr gC a+l++++++ kw+vtk+ +eHnH+ Manes.13G055500.1.p 76 EFYIAYGRHTGFTVRIHHNRRSRVNNMVIGQDFVCSKEGFREKKYIYRKDR-VlpPPPATREGCPAMLRLTLRDGVKWVVTKFIKEHNHT 164 6****************************************99883333.234889****************************** PP FAR1 89 la 90 l+ Manes.13G055500.1.p 165 LM 166 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.3E-22	76	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MIESSSNKVF GSDDSERSFR DYDGHEFTED ELSKNIDLCL GEVDKITWQS NEPPSSSDIV 60 EPCIGMEFNS RDHAREFYIA YGRHTGFTVR IHHNRRSRVN NMVIGQDFVC SKEGFREKKY 120 IYRKDRVLPP PPATREGCPA MLRLTLRDGV KWVVTKFIKE HNHTLMSPSR VPWRGSAKNF 180 ISEDEKDRRI RELTIELNNE KQRCKRQCAA YQEQLRMVLA YIEEHTNHLS TKVQDIVNNV 240 KKLENELQED LDCKYV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G055500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632224.1	0.0	uncharacterized protein LOC110629521 isoform X1
Refseq	XP_021632225.1	0.0	uncharacterized protein LOC110629521 isoform X1
Refseq	XP_021632226.1	0.0	uncharacterized protein LOC110629521 isoform X1
Refseq	XP_021632227.1	0.0	uncharacterized protein LOC110629521 isoform X1
Refseq	XP_021632228.1	0.0	uncharacterized protein LOC110629521 isoform X1
TrEMBL	A0A251JGB4	0.0	A0A251JGB4_MANES; Uncharacterized protein
STRING	XP_002527269.1	1e-155	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Manes.13G055500.1.p