PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G059800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 416aa    MW: 44899.1 Da    PI: 4.8962
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G059800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.34.9e-06444539
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         +C+ +++++   +C+++  +lC +C  + H+       H++
  Manes.13G059800.1.p  4 ICDFCGDQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                         7*****************************65677777765 PP
2zf-B_box18.83.3e-064689441
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C++++ +++ + C + +  lC++C    H +      H++++
  Manes.13G059800.1.p 46 LLCERCNAQPALIRCAEEKISLCQNCDWMVHGSsssstnHKRQT 89
                         57************************999994478888888766 PP
3CCT62.31.5e-21358401144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          R +a++RYkeK+ktRkFeKk+rY+sRKa+A+ R RvKGrFvk+ 
  Manes.13G059800.1.p 358 RCNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAG 401
                          6789*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003365.7E-8447IPR000315B-box-type zinc finger
CDDcd000219.94E-7447No hitNo description
PROSITE profilePS501199.1724390IPR000315B-box-type zinc finger
CDDcd000210.008374790No hitNo description
SMARTSM003361.74890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.2358400IPR010402CCT domain
PfamPF062035.0E-16358400IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGYICDFCGD QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNAQPALIRC  60
AEEKISLCQN CDWMVHGSSS SSTNHKRQTI NCYSGCPSAS ELASLWSFVL DLTSAGESTC  120
ERELGLMSII ENSCSREWGP PENTVNQNVS GTVAVDEADV AKSSVYGGTS SMPEFISGPN  180
NPEQPVGSAN APLPKFCCPG TKGPALCEDD DLYEDFNMDE MDLNLENYEE LFGVTLSHSE  240
ELLENGGINS LFGTKDISAA DSNCQGAVAA EGSSVGLVNA MQPACSNAAS ADSMLSAKTE  300
PILCFTTRQG HSSLSFSGLT GESSAGDYQD CGASSMLLMG EPPWCPPCPE SSCPSSNRCN  360
AVMRYKEKKK TRKFEKKVRY ASRKARADVR RRVKGRFVKA GDAYDYDPLS QTRSY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G059800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633078.10.0zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_021633079.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-151COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2C9UP140.0A0A2C9UP14_MANES; Uncharacterized protein
STRINGcassava4.1_008554m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-124CONSTANS-like 9