PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G063600.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 392aa    MW: 44224.9 Da    PI: 6.8951
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G063600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.82e-141213911374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          l+++L+ cA+avs++d+ +aq+l+ +l++++s +g+p+qRl ay++e+L arla+s+s++ykal+++e +   s+e l+++++++ev+P+
  Manes.13G063600.2.p  21 LKHVLVVCAQAVSDKDMLKAQWLMDELRQMVSVSGEPIQRLSAYMLEGLVARLASSGSSIYKALRCNEPA---SAELLSYMHILYEVCPY 107
                          6899*****************************************************************9...9**************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178
                          +kf+++ aN aI ea++ e+rvHiiDf+i+qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l  +g+rL+++Ae ++vpfef
  Manes.13G063600.2.p 108 FKFGYMSANGAIAEAMKDENRVHIIDFQIGQGSQWITLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLDIVGKRLSRLAEMVKVPFEF 197
                          ***********************************************************998899999********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          ++ +a +  +++le+L+v+pgEalaVn+++ lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n+++F+ rfle+l+yy+a+f
  Manes.13G063600.2.p 198 HA-TAMSGCKVQLENLDVRPGEALAVNFAFVLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFFPRFLETLNYYTAMF 286
                          **.8999*********************************************************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgsl 358
                          +s++++lpr+++eri+vE+++l+r++vn++aceg er+erhe l+kWr+r+++aGF+p+pls+ +++++k+ll+++ ++ yr+ee++g+l
  Manes.13G063600.2.p 287 ESIDVTLPRDHKERINVEQHCLARDVVNIIACEGIERVERHELLGKWRSRFKMAGFTPYPLSSLVNATIKTLLENYCDR-YRLEERDGAL 375
                          *****************************************************************************66.********** PP

                 GRAS 359 vlgWkdrpLvsvSaWr 374
                          +lgW++r Lv+ +aW+
  Manes.13G063600.2.p 376 YLGWMNRDLVASCAWK 391
                          ***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.8621372IPR005202Transcription factor GRAS
PfamPF035146.8E-13921391IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MESPEMDSLR QVMEAISRRD LKHVLVVCAQ AVSDKDMLKA QWLMDELRQM VSVSGEPIQR  60
LSAYMLEGLV ARLASSGSSI YKALRCNEPA SAELLSYMHI LYEVCPYFKF GYMSANGAIA  120
EAMKDENRVH IIDFQIGQGS QWITLIQAFA ARPGGPPHIR ITGIDDSTSA YARGGGLDIV  180
GKRLSRLAEM VKVPFEFHAT AMSGCKVQLE NLDVRPGEAL AVNFAFVLHH MPDESVSTQN  240
HRDRLLRLVK SLSPKVVTLV EQESNTNTAP FFPRFLETLN YYTAMFESID VTLPRDHKER  300
INVEQHCLAR DVVNIIACEG IERVERHELL GKWRSRFKMA GFTPYPLSSL VNATIKTLLE  360
NYCDRYRLEE RDGALYLGWM NRDLVASCAW K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-642839026378Protein SCARECROW
5b3h_A5e-642839025377Protein SCARECROW
5b3h_D5e-642839025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G063600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633759.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A2C9UPE90.0A0A2C9UPE9_MANES; Uncharacterized protein
TrEMBLA0A2C9UQQ00.0A0A2C9UQQ0_MANES; Uncharacterized protein
STRINGcassava4.1_004951m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]