PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G077500.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YB

Protein Properties

Length: 183aa MW: 20111.8 Da PI: 4.7224

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G077500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	111.8	3.8e-35	6	70	33	97
NF-YB 33 etvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 e ecvsefisf+t+easdkcq+ekrktingddllwa++tlGfe+yv plkvyl+kyre+egek Manes.13G077500.1.p 6 EEGAECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFENYVGPLKVYLNKYRETEGEK 70 55679**********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00615	3.3E-18	8	26	No hit	No description
Pfam	PF00808	2.1E-12	9	44	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.6E-25	9	81	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	7.0E-33	9	100	IPR009072	Histone-fold
PROSITE pattern	PS00685	0	11	27	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-18	27	45	No hit	No description
PRINTS	PR00615	3.3E-18	46	64	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MEEEEEEGAE CVSEFISFIT GEASDKCQKE KRKTINGDDL LWAMTTLGFE NYVGPLKVYL 60 NKYRETEGEK NSMARQEDHQ SPPPAAAAGA GGNSSDNHGN EMNKVNGYVS TEVDFQGFNS 120 GFYSLGAQVS RKSSYGENSR FVGYGDHLVD AAASFNMNRK RENGDANNNR PMAAHIHHGV 180 EW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	6e-27	2	65	29	92	Transcription factor HapC (Eurofung)
4g92_B	6e-27	2	65	29	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G077500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631811.1	1e-129	nuclear transcription factor Y subunit B-3-like, partial
TrEMBL	A0A2C9UPU0	1e-133	A0A2C9UPU0_MANES; Uncharacterized protein
STRING	cassava4.1_026597m	1e-118	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF591	34	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14540.1	5e-39	nuclear factor Y, subunit B3

Link Out ? help Back to Top
Phytozome	Manes.13G077500.1.p