PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G081100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 317aa    MW: 34021.1 Da    PI: 8.9493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G081100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.4e-21121170255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrd +     +  r++lg+f+tae Aa+a+++a+++++g
  Manes.13G081100.1.p 121 KYRGVRQRP-WGKWAAEIRDpF-----KaSRVWLGTFDTAEAAARAYDEAALRFRG 170
                          8********.**********66.....56************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-33120179IPR001471AP2/ERF domain
PfamPF008472.1E-14121170IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-23121179IPR016177DNA-binding domain
CDDcd000181.18E-23121180No hitNo description
SMARTSM003801.6E-38121184IPR001471AP2/ERF domain
PROSITE profilePS5103225.673121178IPR001471AP2/ERF domain
PRINTSPR003676.3E-12122133IPR001471AP2/ERF domain
PRINTSPR003676.3E-12144160IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009749Biological Processresponse to glucose
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MASELCRERE MSAMVSALIH VVTGKIPKPS SSEYSLCNEG ANCSSSSSAG GGAKRPREAD  60
NGCQDFTKLS RPLVDDEFSH GRVTKDSKIA AAATTIIPPA EPMFTAIYEH NNTFQEEPMR  120
KYRGVRQRPW GKWAAEIRDP FKASRVWLGT FDTAEAAARA YDEAALRFRG SKAKLNFPEN  180
VKLRPSTPNA HLMNSDSPNT LLSVPTSTQV PMVNSQVAGS GESVNHSQLV LGIGSYQRPA  240
MNLYDKMVLP SSTASLHSQS STFVGSTSST FLLSSSLPHF FPPPSLGYLR RATNQSGGAD  300
TSGPSWSGSS HCSPSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-23120181163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00584DAPTransfer from AT5G64750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G081100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633133.10.0ethylene-responsive transcription factor ABR1-like, partial
TrEMBLA0A2C9UPR30.0A0A2C9UPR3_MANES; Uncharacterized protein
STRINGcassava4.1_026922m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49333254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.12e-25ERF family protein