PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G083400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NAC
Protein Properties Length: 395aa    MW: 44069.2 Da    PI: 4.4268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G083400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1652.7e-5161331128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          lppGfrFhPtd elv++yLk+kv gk+l++ e+i+evdiyk+ PwdLp k ++++++ +wyfF++r+kkya+g+r nrat  gyWk+tgk
  Manes.13G083400.1.p   6 LPPGFRFHPTDVELVKYYLKRKVMGKNLHF-EAIAEVDIYKFAPWDLPnKsCLQTGDLKWYFFCPREKKYASGTRMNRATGLGYWKTTGK 94 
                          79**************************99.89**************95357888899******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d++v+  ++e+vg+ ktLvf++g+apkge+tdWvm eyrl
  Manes.13G083400.1.p  95 DRSVHY-NNEVVGMIKTLVFHRGKAPKGERTDWVMYEYRL 133
                          ******.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.5E-593156IPR003441NAC domain
PROSITE profilePS5100555.8226156IPR003441NAC domain
PfamPF023654.1E-267133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MGKILLPPGF RFHPTDVELV KYYLKRKVMG KNLHFEAIAE VDIYKFAPWD LPNKSCLQTG  60
DLKWYFFCPR EKKYASGTRM NRATGLGYWK TTGKDRSVHY NNEVVGMIKT LVFHRGKAPK  120
GERTDWVMYE YRLDEKELDL RGVAQDAYVL CSVFKKDGPG PRNGAQYGAP FKEEDWDVDD  180
AEEVNNAEVV SSVGMSAPMP ICQNNSIVRS PYVPDGTCFG SPYEVPSDSN TTAVVADSYV  240
ELAEPPQLGN ENDDILAMLA NFSEESPFIP NETKLNEVDN IKDGGNNVAN PCSDGIDIYN  300
DLADLSNLVG FGEPEYNVSG DPWCSTMDQM QGSDKVHFLE LRDLDAPLNC STEDFGYEQV  360
NIGGFYAPNP CNSAELVHGT AKLHQIHEDE KSQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48115712166NO APICAL MERISTEM PROTEIN
1ut4_B1e-48115712166NO APICAL MERISTEM PROTEIN
1ut7_A1e-48115712166NO APICAL MERISTEM PROTEIN
1ut7_B1e-48115712166NO APICAL MERISTEM PROTEIN
3swm_A1e-48115715169NAC domain-containing protein 19
3swm_B1e-48115715169NAC domain-containing protein 19
3swm_C1e-48115715169NAC domain-containing protein 19
3swm_D1e-48115715169NAC domain-containing protein 19
3swp_A1e-48115715169NAC domain-containing protein 19
3swp_B1e-48115715169NAC domain-containing protein 19
3swp_C1e-48115715169NAC domain-containing protein 19
3swp_D1e-48115715169NAC domain-containing protein 19
4dul_A1e-48115712166NAC domain-containing protein 19
4dul_B1e-48115712166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G083400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR6051510.0KR605151.1 Manihot esculenta NAC transcription factors 13 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632958.10.0NAC domain-containing protein 82-like
SwissprotQ9FY821e-100NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A0M3R8510.0A0A0M3R851_MANES; NAC transcription factors 13
STRINGcassava4.1_009240m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33023465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09330.42e-95NAC domain containing protein 82
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Hu W, et al.
    Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava.
    PLoS ONE, 2015. 10(8): p. e0136993
    [PMID:26317631]
  4. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]