PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G083400.2.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NAC

Protein Properties

Length: 316aa MW: 34744.2 Da PI: 4.0691

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G083400.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	62.3	1.5e-19	2	54	75	128
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 nrat gyWk+tgkd++v+ ++e+vg+ ktLvf++g+apkge+tdWvm eyrl Manes.13G083400.2.p 2 NRATGLGYWKTTGKDRSVHY-NNEVVGMIKTLVFHRGKAPKGERTDWVMYEYRL 54 89****************.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	28.401	1	77	IPR003441	NAC domain
SuperFamily	SSF101941	1.31E-24	2	77	IPR003441	NAC domain
Pfam	PF02365	5.3E-8	2	54	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MNRATGLGYW KTTGKDRSVH YNNEVVGMIK TLVFHRGKAP KGERTDWVMY EYRLDEKELD 60 LRGVAQDAYV LCSVFKKDGP GPRNGAQYGA PFKEEDWDVD DAEEVNNAEV VSSVGMSAPM 120 PICQNNSIVR SPYVPDGTCF GSPYEVPSDS NTTAVVADSY VELAEPPQLG NENDDILAML 180 ANFSEESPFI PNETKLNEVD NIKDGGNNVA NPCSDGIDIY NDLADLSNLV GFGEPEYNVS 240 GDPWCSTMDQ MQGSDKVHFL ELRDLDAPLN CSTEDFGYEQ VNIGGFYAPN PCNSAELVHG 300 TAKLHQIHED EKSQF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-16	2	78	90	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-16	2	78	90	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-16	2	78	90	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-16	2	78	90	166	NO APICAL MERISTEM PROTEIN
3swm_A	1e-16	2	78	93	169	NAC domain-containing protein 19
3swm_B	1e-16	2	78	93	169	NAC domain-containing protein 19
3swm_C	1e-16	2	78	93	169	NAC domain-containing protein 19
3swm_D	1e-16	2	78	93	169	NAC domain-containing protein 19
3swp_A	1e-16	2	78	93	169	NAC domain-containing protein 19
3swp_B	1e-16	2	78	93	169	NAC domain-containing protein 19
3swp_C	1e-16	2	78	93	169	NAC domain-containing protein 19
3swp_D	1e-16	2	78	93	169	NAC domain-containing protein 19
4dul_A	1e-16	2	78	90	166	NAC domain-containing protein 19
4dul_B	1e-16	2	78	90	166	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G083400.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605151	0.0	KR605151.1 Manihot esculenta NAC transcription factors 13 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632958.1	0.0	NAC domain-containing protein 82-like
TrEMBL	A0A2C9URD4	0.0	A0A2C9URD4_MANES; Uncharacterized protein
STRING	cassava4.1_009240m	0.0	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	9e-48	NAC domain containing protein 82

Link Out ? help Back to Top
Phytozome	Manes.13G083400.2.p

Publications ? help Back to Top
Hu W, et al. Genome-Wide Identification and Expression Analysis of the NAC Transcription Factor Family in Cassava. PLoS ONE, 2015. 10(8): p. e0136993 [PMID:26317631]