PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G085400.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HB-other
Protein Properties Length: 357aa    MW: 39727 Da    PI: 8.1617
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G085400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.76.2e-0631742255
                         SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
             Homeobox 22 nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                         n  p +e    LA+k            ++ +qV +WFqNrR+  
  Manes.13G085400.1.p 31 NTMPAREVLVALAEKFsesperkgkiVVQMKQVWNWFQNRRYAI 74
                         566777777777777777777777668899***********865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.25E-9478IPR009057Homeodomain-like
SMARTSM003890.0096781IPR001356Homeobox domain
PROSITE profilePS500718.8271377IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.0E-71381IPR009057Homeodomain-like
PfamPF167199.4E-41135261IPR032001SAWADEE domain
CDDcd000240.00507148181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFMANEVM EMEGILQDHH NTMPAREVLV ALAEKFSESP ERKGKIVVQM  60
KQVWNWFQNR RYAIRAKSSK APVKLNVTPM AREESAPVRS VPQPVAASIP TPVSTTTVAP  120
SVSTAGRVIT EISYTEFEAK SARDGAWYDV GTFLSHRHLD TGDPEVLVRF AGFGPDEDEW  180
VNIRKHVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDIRGCRC  240
RFLVRYDHDL SEEIVPLRKV CRRPETDYRL QQLHAANDMA TSDHQKTSTD PSTTSIQRIT  300
AESVQRQQNA HVTAGPVSHA KISLPAQKMT PEPKTAEISN TVNVGNPTLL PSSTLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A5e-471372656134SHH1 SAWADEE
4iur_B5e-471372656134SHH1 SAWADEE
4iut_A5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B5e-471372656134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G085400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633253.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X1
SwissprotQ8RWJ71e-147SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2C9UQA30.0A0A2C9UQA3_MANES; Uncharacterized protein
STRINGcassava4.1_011330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-133sequence-specific DNA binding transcription factors;sequence-specific DNA binding