PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G090200.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

M-type_MADS

Protein Properties

Length: 304aa MW: 34065.6 Da PI: 4.903

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G090200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.9	4.8e-27	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+EL +LCd+++a+i+fs++g+l +s Manes.13G090200.1.p 9 KRIENNTNRQVTFSKRRNGLIKKAYELAILCDIDIALIMFSPSGRLSHFS 58 79********************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.1	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.8E-36	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.59E-36	2	77	No hit	No description
SuperFamily	SSF55455	1.31E-28	2	77	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-25	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.4E-25	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-25	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.5E-25	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MGRVKLPIKR IENNTNRQVT FSKRRNGLIK KAYELAILCD IDIALIMFSP SGRLSHFSGK 60 QRIEDVIARY INFPENDGGC DVQNREYLLS TLKKLKTEND MALQAAKYEL QQEVCNLQHQ 120 VQIAEDQLRI YEPDPLKFTS MGELESCEKN LLDVMTLLQD RKKYLLSNHA SAYDPSTLQI 180 YLDSEEGLQN FQNEIANWLP PENGQNPNAV ALKSDQSSCI PVSNNQSSTT MFDGLSPRGT 240 NVNVDPCNMG VGGTAQINNS DSETITSWQQ AFSSLSSTEL LAAFMPPSSF PLMKVISFLL 300 FFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
1tqe_Q	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
1tqe_R	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
1tqe_S	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_A	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_B	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_C	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_D	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_E	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
6c9l_F	9e-17	1	75	1	74	Myocyte-specific enhancer factor 2B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G090200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021650890.1	0.0	agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	2e-78	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A2C9UQF2	0.0	A0A2C9UQF2_MANES; Uncharacterized protein
STRING	cassava4.1_029636m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8525	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	1e-69	AGAMOUS-like 104

Link Out ? help Back to Top
Phytozome	Manes.13G090200.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]