PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G091300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family CO-like
Protein Properties Length: 408aa    MW: 45213.1 Da    PI: 5.9355
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G091300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.49.2e-06244339
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                         e+ C+ ++  ++  +C++++  lC +C +  H+       H++
  Manes.13G091300.1.p  2 EPLCEFCGVVRAVVYCKSDSARLCLNCDEFVHSAnclsqrHSR 44
                         689******99*********************65677777765 PP
2zf-B_box16.71.5e-054672430
             zf-B_box  4 rkCpeHeekelqlfCedCqqllCedCl 30
                           C+++++++++l C d++  +C++C 
  Manes.13G091300.1.p 46 LLCDKCNSQPAILRCLDDKLSFCQNCD 72
                         68************************7 PP
3CCT48.82.6e-17338373136
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRv 36 
                          Re+a++RYkeK+ktR F K+irY+sRKa+A++R+Rv
  Manes.13G091300.1.p 338 REKAKMRYKEKKKTRTFGKQIRYASRKALADTRKRV 373
                          99*********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.9E-9147IPR000315B-box-type zinc finger
PROSITE profilePS501199.143147IPR000315B-box-type zinc finger
CDDcd000212.88E-6347No hitNo description
CDDcd000210.003234773No hitNo description
PfamPF062031.9E-12338373IPR010402CCT domain
PROSITE profilePS5101711.38338380IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MEPLCEFCGV VRAVVYCKSD SARLCLNCDE FVHSANCLSQ RHSRSLLCDK CNSQPAILRC  60
LDDKLSFCQN CDWNNTNSCS SSGHHLQVLS CYTGRPSLAE FSRIWSFVLD ASPSTITSYD  120
PEGLGTTSLP SLQGNEDSMI SCLKNKDNEG TFGLVNRKLN ELEPWMRTSN VIPQDPNSLP  180
CCRDQVSFLP EDPNMSKAGC SNFKELEIQD GEDLCQGLNM DDVALNFENG DDIFGCPQVQ  240
PRNQQGDIGK DCILMEKSLS AMYGSTSCLS MNPSSNRSIN LGFPTTTGQI HPSISLSLSN  300
ITGESSAADY QDCGLSPVFL AKESPRELNL ETSCPQAREK AKMRYKEKKK TRTFGKQIRY  360
ASRKALADTR KRVVKAGEAY DYDPFPHLYL ICAKQFVDNL VKNTLLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G091300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631498.10.0zinc finger protein CONSTANS-LIKE 12-like, partial
TrEMBLA0A2C9UQA50.0A0A2C9UQA5_MANES; Uncharacterized protein
STRINGcassava4.1_023702m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70521923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21880.12e-88B-box type zinc finger protein with CCT domain