PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G096900.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35374.1 Da    PI: 4.4965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G096900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1960113356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ +q+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  Manes.13G096900.1.p  60 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113
                          566899***********************************************9 PP
2HD-ZIP_I/II125.82e-4059151193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++y+a k + e+L++++e L +e
  Manes.13G096900.1.p  59 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEAFKLNFESLQHDNEVLLKE 148
                          69*************************************************************************************999 PP

          HD-ZIP_I/II  91 lke 93 
                          ++e
  Manes.13G096900.1.p 149 VRE 151
                          876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.33E-1938117IPR009057Homeodomain-like
PROSITE profilePS5007117.34655115IPR001356Homeobox domain
SMARTSM003891.1E-1758119IPR001356Homeobox domain
CDDcd000861.86E-1660116No hitNo description
PfamPF000463.5E-1660113IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.2E-2062122IPR009057Homeodomain-like
PRINTSPR000318.7E-68695IPR000047Helix-turn-helix motif
PROSITE patternPS00027090113IPR017970Homeobox, conserved site
PRINTSPR000318.7E-695111IPR000047Helix-turn-helix motif
PfamPF021835.5E-17115156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSRLGSSDSL GALMSICPST DEHSPRNSNH VYGREFQSMS MLDSLDDEAC VEESGHVAEK  60
KRRLSVDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD  120
YGVLKANYEA FKLNFESLQH DNEVLLKEVR ELKAKLNGEK TESNVSVKEE IILAESDDKA  180
SEEEPLLLGS EVKDLNYESF NSDNKGVLEA SLFTEFKDGS SDSDSSAILN EDNSPNPAIS  240
SSTGILQNHL LMMSPPPPSS SSSSFQFTKT TTYQTQFVKM EEHNFFSSEE ACNFFSDEQA  300
PTLQWYCPDQ WN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107115RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function as a negative regulator of the flowering time response to photoperiod. May act to repress cell expansion during plant development. {ECO:0000269|PubMed:14623244}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G096900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633200.10.0homeobox-leucine zipper protein ATHB-6-like
SwissprotQ940J11e-81ATB16_ARATH; Homeobox-leucine zipper protein ATHB-16
TrEMBLA0A2C9UQG50.0A0A2C9UQG5_MANES; Uncharacterized protein
STRINGcassava4.1_012269m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-80homeobox protein 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]