PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G098300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 256aa    MW: 27669.7 Da    PI: 7.4382
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G098300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1031.9e-3249104359
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          k rY+eClkNhA+ +GghavDGCgEfm++ g+egt +alkCaAC+CHRnFHR+e ++
  Manes.13G098300.1.p  49 KPRYRECLKNHAVGIGGHAVDGCGEFMAA-GAEGTLDALKCAACNCHRNFHRKEIND 104
                          679*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-2328101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-2951102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-2951102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.13752101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466897.98E-20178253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-32183254IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-24192248IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEFEDQEEHE EEEGMGFPAS YDALGNSSRV KMTSSGGEQA GAGLVQSTKP RYRECLKNHA  60
VGIGGHAVDG CGEFMAAGAE GTLDALKCAA CNCHRNFHRK EINDSTTPGG GGGGGELFFH  120
GHPHPHHLHQ PMPQFAPYYR TPAGYLHVAP AQQRPLALPS TSGGQSREDQ EDMSNPSGGG  180
YGGGSGTGGS SRKRFRTKFT QEQKDRMLAL AERLGWRIQK DDEAAVQQFC NETGVKRHVL  240
KVWMHNNKHT LGKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-271932501875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G098300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632150.10.0zinc-finger homeodomain protein 2-like
SwissprotQ6YXH51e-82ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A2C9URT40.0A0A2C9URT4_MANES; Uncharacterized protein
STRINGcassava4.1_034182m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-64homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]