PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G105800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 348aa    MW: 38701.6 Da    PI: 6.4022
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G105800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12174220455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Manes.13G105800.1.p 174 DHVLAERKRREKLSQRFISLSAVVPGL-----KKMDKASVLGDAIKYLKHLQ 220
                          58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16174232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-16175233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.61E-13175224No hitNo description
PfamPF000101.1E-9175220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.895280347IPR002912ACT domain
CDDcd021160.00298281338No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEISSAKWLS ELGMEDSAFS YQYQMNPLDY PFEDLDFHGF SAKSYSTNEQ IFNPQTVQNF  60
SCAPIESSQT SYERPKKQLK TSSWNSCTTE QINSKPPPSS SHIISFENSN SSAATSQQLY  120
GLDPTSVKPK KEAGTNGNSN YPSALCCQGS FEEYGQGNNK KAGTLSRSPL HAQDHVLAER  180
KRREKLSQRF ISLSAVVPGL KKMDKASVLG DAIKYLKHLQ ERVKTLEEQA AKKTMESVVF  240
VKKSQVYVDD DLSSTDENSV GCCDQPLPEI EVRVSDKDLL IRIHCENQKG CLLKILSELE  300
KFHLNVINSS VLPFGNSTLD VTVVAQMDGD FSMTVKDLVR NLRQALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A6e-13174229863Transcription factor MYC2
5gnj_B6e-13174229863Transcription factor MYC2
5gnj_E6e-13174229863Transcription factor MYC2
5gnj_F6e-13174229863Transcription factor MYC2
5gnj_G6e-13174229863Transcription factor MYC2
5gnj_I6e-13174229863Transcription factor MYC2
5gnj_M6e-13174229863Transcription factor MYC2
5gnj_N6e-13174229863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183ERKRRE
2179184RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G105800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632371.10.0transcription factor bHLH18-like
TrEMBLA0A2C9UQF50.0A0A2C9UQF5_MANES; Uncharacterized protein
STRINGcassava4.1_010938m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.15e-73bHLH family protein