PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G105800.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 335aa    MW: 37268.9 Da    PI: 6.6207
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G105800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.54.4e-12161207455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h  +Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Manes.13G105800.2.p 161 DHVLAERKRREKLSQRFISLSAVVPGL-----KKMDKASVLGDAIKYLKHLQ 207
                          58899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-16161219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9162207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.14E-13162211No hitNo description
SuperFamilySSF474591.96E-16162220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-15163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.895267334IPR002912ACT domain
CDDcd021160.00281268325No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDSAFSYQY QMNPLDYPFE DLDFHGFSAK SYSTNEQIFN PQTVQNFSCA PIESSQTSYE  60
RPKKQLKTSS WNSCTTEQIN SKPPPSSSHI ISFENSNSSA ATSQQLYGLD PTSVKPKKEA  120
GTNGNSNYPS ALCCQGSFEE YGQGNNKKAG TLSRSPLHAQ DHVLAERKRR EKLSQRFISL  180
SAVVPGLKKM DKASVLGDAI KYLKHLQERV KTLEEQAAKK TMESVVFVKK SQVYVDDDLS  240
STDENSVGCC DQPLPEIEVR VSDKDLLIRI HCENQKGCLL KILSELEKFH LNVINSSVLP  300
FGNSTLDVTV VAQMDGDFSM TVKDLVRNLR QALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-13161216863Transcription factor MYC2
5gnj_B5e-13161216863Transcription factor MYC2
5gnj_E5e-13161216863Transcription factor MYC2
5gnj_F5e-13161216863Transcription factor MYC2
5gnj_G5e-13161216863Transcription factor MYC2
5gnj_I5e-13161216863Transcription factor MYC2
5gnj_M5e-13161216863Transcription factor MYC2
5gnj_N5e-13161216863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170ERKRRE
2166171RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G105800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632371.10.0transcription factor bHLH18-like
TrEMBLA0A2C9UQF50.0A0A2C9UQF5_MANES; Uncharacterized protein
TrEMBLA0A2C9UQT90.0A0A2C9UQT9_MANES; Uncharacterized protein
STRINGcassava4.1_010938m0.0(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-71bHLH family protein