PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G113000.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

LBD

Protein Properties

Length: 248aa MW: 27081.9 Da PI: 8.5027

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G113000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.6	1.5e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg+++++++ Manes.13G113000.1.p 2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPENQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNW 91 6*************************************************************************************** PP DUF260 86 qleqlkaelall 97 +++q+++e++l+ Manes.13G113000.1.p 92 HVCQAAVETVLR 103 ****998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.675	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.5E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0060776	Biological Process	simple leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPENQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PELLAAGGSP 120 SPASDEASEV EVTCTDMWTL QDPNPNPHSR FSNSRSKVSP KRKPIDEPVN LVKQQQLQLQ 180 LTGKDLDLRL TPTFSKKTSH RKLENRRLGS PSMNSEESVT TRTTCLESGP GDLYGNRGET 240 KLLNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G113000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214283	2e-49	AC214283.1 Populus trichocarpa clone POP036-B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021631749.1	0.0	LOB domain-containing protein 37-like isoform X1
Swissprot	Q9FN11	1e-92	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A2C9UR36	0.0	A0A2C9UR36_MANES; Uncharacterized protein
STRING	cassava4.1_014770m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	5e-95	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Manes.13G113000.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]