PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G125100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 180aa    MW: 20481.7 Da    PI: 4.7985
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G125100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.93.9e-2153102255
                  AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+GVr+++ +g+W+AeIrd +     + +r++lg+f taeeAa a+++a+ +++g
  Manes.13G125100.1.p  53 KYRGVRQRP-WGKWAAEIRDpW-----KaTRVWLGTFNTAEEAAMAYDKAAIRFRG 102
                          8********.**********88.....66************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3953116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-3353111IPR001471AP2/ERF domain
PfamPF008475.3E-1453102IPR001471AP2/ERF domain
PROSITE profilePS5103224.5453110IPR001471AP2/ERF domain
CDDcd000184.11E-3553112No hitNo description
SuperFamilySSF541716.54E-2453112IPR016177DNA-binding domain
PRINTSPR003672.7E-125465IPR001471AP2/ERF domain
PRINTSPR003672.7E-127692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MQIIQDSASK CPVCNMNSVD CLGCNYFVSD QEQESGDGEG KGGGNRRRTK KNKYRGVRQR  60
PWGKWAAEIR DPWKATRVWL GTFNTAEEAA MAYDKAAIRF RGKKAKTNFP LSKYTQMQIT  120
DNKEMEVYKL DVHGEGGSSS SKVEEEKNNN KQVNADPIEV DEEEEEEEDY LLDDMFMEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2449111164ATERF1
3gcc_A1e-2449111164ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G125100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633661.11e-133ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2C9URD91e-131A0A2C9URD9_MANES; Uncharacterized protein
STRINGcassava4.1_029125m1e-133(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.19e-21related to AP2 6