PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.13G130300.1.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

Dof

Protein Properties

Length: 244aa MW: 25057.8 Da PI: 7.9591

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.13G130300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.1e-38	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l+cprCdstntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGgg+rkn k+s Manes.13G130300.1.p 24 EQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 84 57889****************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	21	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.9E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.255	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MPSDTSTETR RLTKPHTAGA PPPEQEHLPC PRCDSTNTKF CYYNNYNFSQ PRHFCKSCRR 60 YWTHGGTLRD IPVGGGTRKN AKRSRTAATA NFIGPITTTA GDNFPLPATP VLVPLMTNHA 120 TSVQFGCGGG HGKGGGSSTT ADSAVCGSFT SLLNTQGPGF LALGGFGLGL GSGFEDMGCG 180 LGRGVWPFPS VGDVGAGDGG GHGGMSGGMG NTWQFESGDN GFVGGDCFSW PDLAISTPGN 240 GLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.13G130300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021632370.1	1e-176	dof zinc finger protein DOF3.4-like
Swissprot	Q39088	4e-63	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2C9USS3	1e-175	A0A2C9USS3_MANES; Uncharacterized protein
STRING	cassava4.1_014933m	1e-176	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2801	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	2e-57	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Manes.13G130300.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]