PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G136800.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family HD-ZIP
Protein Properties Length: 207aa    MW: 23913.3 Da    PI: 9.2863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G136800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.81.1e-1954108357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k+++++++q++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Manes.13G136800.1.p  54 KKRKLSADQVNLLEMNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 108
                          456899***********************************************95 PP
2HD-ZIP_I/II116.71.4e-3754144292
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkr+ls++qv+lLE++F +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++   e++rLe+ev +L+e+l
  Manes.13G136800.1.p  54 KKRKLSADQVNLLEMNFGNEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHETNIIEKCRLESEVLKLKEKL 143
                          9**************************************************************************************998 PP

          HD-ZIP_I/II  92 k 92 
                           
  Manes.13G136800.1.p 144 L 144
                          5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.42249109IPR001356Homeobox domain
SMARTSM003891.6E-1852113IPR001356Homeobox domain
SuperFamilySSF466891.54E-1753116IPR009057Homeodomain-like
PfamPF000467.3E-1754108IPR001356Homeobox domain
CDDcd000862.88E-1554110No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2056116IPR009057Homeodomain-like
PRINTSPR000318.1E-68089IPR000047Helix-turn-helix motif
PROSITE patternPS00027084107IPR017970Homeobox, conserved site
PRINTSPR000318.1E-689105IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTTTIMNHNK VDQDHMALLS QLYYTQMVPQ QGEPKPRRRR KKNKGAENGV TGAKKRKLSA  60
DQVNLLEMNF GNEHKLESER KDKLASELGL DPRQVAVWFQ NRRARWKNKK LEEEYTKLKT  120
AHETNIIEKC RLESEVLKLK EKLLEAEKEI QRLTEKIDGV SSNSCSSTLS MNTPFLGEFG  180
MEGIGDIFYM SETNYIHGME WSNLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13755RRRKKNKGAENGVTGAKKR
23956RKKNKGAENGVTGAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G136800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633487.11e-153homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU705e-73ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLA0A2C9URJ41e-152A0A2C9URJ4_MANES; Uncharacterized protein
STRINGcassava4.1_027319m1e-153(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.15e-45homeobox protein 21
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]