PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G137100.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family GRAS
Protein Properties Length: 531aa    MW: 59802.2 Da    PI: 6.1971
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G137100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.71.6e-881675292374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          ++ L+++A++++s++ +la+ +L rl+++ +sp g+p+qR+a++f+eAL+  l++     +   p++ +s++++++++ ++k+fs +sPi
  Manes.13G137100.1.p 167 IQELIRAADCIDSNEIQLARVILDRLNHRlQSPVGKPLQRAAFFFKEALQFLLTG-----SPRPPTRLASWSEVVQTIRVYKAFSGISPI 251
                          789*************************99*************************.....6667888999999***************** PP

                 GRAS  91 lkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                          + f+h+taNqa+le ++g+   +H+iDfdi+ G Q+++++++L +++     ++p lRiT+++ +  + + e++ +++ L+++A el+++
  Manes.13G137100.1.p 252 PMFTHFTANQALLETLDGSpPFLHVIDFDIGLGCQYASFMRELVEKAdsckLSSPVLRITAIVTE--DYAIETQLIKQCLSQYAFELKIR 339
                          *******************9999***********************95554459**********5..5999******************* PP

                 GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealey 263
                          f++++++ +++e l+++++++ ++E++ V l+ + +r l++s s++     +   ++++s+ vvvvv++e  ++ +s+sF + f++ le+
  Manes.13G137100.1.p 340 FQIEFVLLRTFEVLSFKSINFMEREKTTVLLSPAFFRRLSSSISITA----FATDLRRVSAGVVVVVDSEgwSESGSSSFRRNFVNGLEF 425
                          ***************************************77777777....*******************766779************** PP

                 GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                          +s++f+sl+a + +  + ++k+E  ll+++i + v   +++       +  W+e +  aG++p+++s++a  qa++ll kv+++g+ v +
  Manes.13G137100.1.p 426 FSMVFESLDAAA-AGGDLARKIEMLLLKPRIFSFVEGCERR------VATPWKEEFCGAGMRPMAFSQFADFQAECLLGKVQVRGFYVAK 508
                          ********9995.56677789*************9654443......6789*************************************** PP

                 GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                          ++++lvl+W++rpL+++SaW+
  Manes.13G137100.1.p 509 RQAELVLCWHERPLIATSAWK 529
                          ********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.016140509IPR005202Transcription factor GRAS
PfamPF035145.6E-86167529IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MKVPVSSPQN NHHNHHQSPN SRPVSCNNNI NSKYQLPYQQ LYPEPTSVLD LCRSPSPVPA  60
KQVSATDPSL EWDEHVLQAF DWDAIMKELD FHDDSAPTLK SFSQVNSYES VIHNQNLQEF  120
AVPAQTDPSQ FLHSDFGDAC FNIPTQNLSS LDLSHNIGNW NIGFDIIQEL IRAADCIDSN  180
EIQLARVILD RLNHRLQSPV GKPLQRAAFF FKEALQFLLT GSPRPPTRLA SWSEVVQTIR  240
VYKAFSGISP IPMFTHFTAN QALLETLDGS PPFLHVIDFD IGLGCQYASF MRELVEKADS  300
CKLSSPVLRI TAIVTEDYAI ETQLIKQCLS QYAFELKIRF QIEFVLLRTF EVLSFKSINF  360
MEREKTTVLL SPAFFRRLSS SISITAFATD LRRVSAGVVV VVDSEGWSES GSSSFRRNFV  420
NGLEFFSMVF ESLDAAAAGG DLARKIEMLL LKPRIFSFVE GCERRVATPW KEEFCGAGMR  480
PMAFSQFADF QAECLLGKVQ VRGFYVAKRQ AELVLCWHER PLIATSAWKC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-2417452827378Protein SCARECROW
5b3h_A8e-2417452826377Protein SCARECROW
5b3h_D8e-2417452826377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G137100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633161.10.0scarecrow-like protein 15
SwissprotO232101e-172SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A2C9USR80.0A0A2C9USR8_MANES; Uncharacterized protein
STRINGcassava4.1_005357m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-153GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]