PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G145600.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 226aa    MW: 25364.7 Da    PI: 6.939
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G145600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-093282153
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHH CS
                  HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIks 53
                         r++  + +E+ RR+++++ f++L +llPk+   +s+  l   +   +A++YIk 
  Manes.13G145600.1.p 32 RKTERKVIEKIRRNQMKTLFSNLYSLLPKQ---SSQEaLPLTDQIDEAINYIKT 82
                         6788899**********************7...55555**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-929104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-1129109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.52E-43081No hitNo description
PROSITE profilePS5088810.9373183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-53282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGEGNVLVSS MMEMTHSSSA TAALLPSSTS SRKTERKVIE KIRRNQMKTL FSNLYSLLPK  60
QSSQEALPLT DQIDEAINYI KTQEAKLKKF KEKKESLTSR KRSFSKCTSS FESTSTSRAP  120
KLEIREMGSS LQIILISGLD NQFLFCEIIR VLQDEGVEIA TASFSVHGNS IFHTVHAQMR  180
ECDFSFGAAK VTERLNRFIN GSTSEVESEP DLWNFNDLDP ETWAF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G145600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021632230.11e-166transcription factor bHLH162-like
TrEMBLA0A2C9UT061e-164A0A2C9UT06_MANES; Uncharacterized protein
STRINGcassava4.1_015591m1e-165(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-36bHLH family protein