PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.13G148300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ERF
Protein Properties Length: 475aa    MW: 52704.5 Da    PI: 6.7202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.13G148300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.9e-19227277256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Manes.13G148300.1.p 227 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 277
                          59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.32E-34226286No hitNo description
SMARTSM003801.5E-40227290IPR001471AP2/ERF domain
PROSITE profilePS5103222.998227284IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23227285IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.1E-32227285IPR001471AP2/ERF domain
PfamPF008472.8E-12228277IPR001471AP2/ERF domain
PRINTSPR003678.7E-11228239IPR001471AP2/ERF domain
PRINTSPR003678.7E-11250266IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAATKNNAGK SRKGADEKQR LTRQDWELDR CKEETNLSFH ERQQRKPVFG EASAAERPLK  60
KIRSPERQEP IQFSAFSTHQ SVASFSISPS SSFSSHPPTS SSSSSSALPS GSSIQFPFSF  120
EGCNQPMQFP HQLMTNPSLP YLLSLTQVAQ NQQQIISYAQ NQQQGIACPQ LFAGESALAH  180
KQQQQQLFQY WSDTLNLSPR GMMMNRLGPD GRPLFRPPVQ PINTTKLYRG VRQRHWGKWV  240
AEIRLPRNRT RLWLGTFDTA EDAAMAYDRE AFKLRGENAR LNFPELFLNK DKAITTAPTS  300
TVSSPPTPNQ SSSPKQTKQI LDLRASSMEN MPPPPPVPPP SQPSQGDNPD NDSGMCSSGA  360
TVSDEVQAVA EGCSGGEDIS VSQELVWGDM AESWFNAIPS GWEPGSPIWD DFDTTNNLLM  420
QTHLPFGNPN QQQFNDSSEL QRQQHNMSLA SSSSSASSFS SSIPMKPFFW KDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-21226284160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.13G148300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631591.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A2C9UTC40.0A0A2C9UTC4_MANES; Uncharacterized protein
STRINGcassava4.1_006833m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.18e-49ERF family protein