PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Manes.14G003100.3.p

Organism

Manihot esculenta

Taxonomic ID

3983

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot

Family

NF-YA

Protein Properties

Length: 210aa MW: 22853.5 Da PI: 10.254

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Manes.14G003100.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.8	7.7e-33	31	87	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RRq+Rak+e ekkl +k+rkpylheSRh+hA+rR+Rg+gGrF Manes.14G003100.3.p 31 QEPVYVNAKQYQGILRRRQARAKAELEKKL-IKARKPYLHESRHQHAMRRARGTGGRF 87 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.1E-36	29	90	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.361	30	90	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.0E-28	32	87	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.6E-24	33	55	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	35	55	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.6E-24	64	87	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MMAAYGHQPM SYPHLIGLHH ARMPLPQEVA QEPVYVNAKQ YQGILRRRQA RAKAELEKKL 60 IKARKPYLHE SRHQHAMRRA RGTGGRFAKK IHADASNNTT EGTSNDPGPV LSSQSGSGSS 120 SISEPLPSDS ADRWIFPHGE QGTIASQVLV TSEAKNHVHG GTFYLKHNGL QTLTHHSLAG 180 EKGEEGDCSG QQRGSISSNQ ASQRPLSIQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	1e-19	31	103	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Manes.14G003100.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021591865.1	1e-153	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_021591866.1	1e-153	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_021591867.1	1e-153	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_021591869.1	1e-153	nuclear transcription factor Y subunit A-1-like isoform X2
Swissprot	Q945M9	9e-52	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A251JPR9	1e-151	A0A251JPR9_MANES; Uncharacterized protein
TrEMBL	A0A2C9UIM5	1e-153	A0A2C9UIM5_MANES; Uncharacterized protein
STRING	cassava4.1_007505m	1e-151	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-35	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Phytozome	Manes.14G003100.3.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]