PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.14G013300.1.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family bHLH
Protein Properties Length: 413aa    MW: 45848.7 Da    PI: 6.8712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.14G013300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12346391655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l+P+     +k  + a++L +Av+YIk+Lq
  Manes.14G013300.1.p 346 SIAERVRRTRISERMRKLQDLVPNM----DKQTNTADMLDLAVDYIKDLQ 391
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.275340390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.27E-16343403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.30E-13344395No hitNo description
Gene3DG3DSA:4.10.280.102.6E-15345402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14346396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-9346391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MESDLQHHHH FLHDHHQHQQ HHQKQMNSGL MRYQSAPSSF FTGFLDRESC EEFLNKPTSP  60
ETERIFARFL ANSGGDTENM LNQNFGVIKQ ESPVGEAVAQ VNQQAQINDT TFHQQEQQQK  120
SNYSSSASQS FYQNQSRPPL PDQSSGSGMD YRMVTSMGME HLPQVKSSNS NLVRHSSSPA  180
GLFSNINIEM ENGYAVLRGM GEFGAGNRET SYSAASRPPP PSSGRMSPIA EIGNKNMGEN  240
SPENSGFGET RSNNYVTGFP ISSWDDTSVM SAGAKRLTDD DRTLSGVNAS ETQDVDAGNH  300
PPLLAHHLSL PKTSAELSAI EKFLQLQDSV PCKIRAKRGC ATHPRSIAER VRRTRISERM  360
RKLQDLVPNM DKQTNTADML DLAVDYIKDL QRQVKTLSET RAKCTCTSKQ ES*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapManes.14G013300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633994.10.0transcription factor bHLH122
TrEMBLA0A2C9UIT40.0A0A2C9UIT4_MANES; Uncharacterized protein
STRINGcassava4.1_008682m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.15e-58bHLH family protein